| Volume 5, Number 4, Article 5, Pages 331-347 |
doi:10.1167/5.4.5 |
http://journalofvision.org/5/4/5/ |
ISSN 1534-7362 |
A cellular and molecular model of response kinetics and adaptation in primate cones and horizontal cells
Hans van Hateren |
Department of Neurobiophysics, University of Groningen, Groningen, The Netherlands |
|
Abstract
A model for the sensitivity regulation in the primate outer retina is developed and validated using horizontal cell measurements from the literature. The main conclusion is that the phototransduction of the cones is the key factor regulating sensitivity. The model consists of a nonlinearity cascaded with three feedback control loops. The nonlinearity is caused by the hydrolysis of cGMP by activated phosphodiesterase. The first feedback loop is divisive, with calcium regulating the photocurrent in the cone outer segment. The second feedback loop is also divisive, with voltage-sensitive channels regulating the membrane voltage of the cone inner segment. The final feedback loop is subtractive, where the membrane voltage of the horizontal cell is subtracted from that of the cone before the cone drives the horizontal and bipolar cells. The model describes adequately the major characteristics of the horizontal cell responses to wide field, spectrally white stimuli. In particular, it shows (1) sensitivity and bandwidth control as a function of background intensity; (2) the major nonlinearities observed in the horizontal cells; and (3) the transition from linear responses toward contrast constancy (Weber's law) for background illuminances ranging from 1-1000 td.
 |
|
History
Received October 31, 2004; published April 15, 2005
Citation
van Hateren, J. H. (2005). A cellular and molecular model of response kinetics and adaptation in primate cones and horizontal cells.
Journal of Vision, 5(4):5, 331-347,
http://journalofvision.org/5/4/5/,
doi:10.1167/5.4.5.
Keywords
horizontal cells, macaque, cone, sensory transduction, light adaptation, computational model
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The light intensity of visual stimuli varies enormously
in natural environments. Visual systems generally cope with these variations by
regulating sensitivity to light at an early stage of visual processing. In the
visual system of the macaque, Smith, Pokorny, Lee, and Dacey ( 2001) showed that such a regulation could be
measured at the level of the horizontal cells in the outer retina. These cells
are directly postsynaptic to the cones. They are thought to provide feedback to
the cone pedicles, and thus regulate the temporal, spatial, and spectral
properties of the output of the cones to the bipolar cells.
A fully adequate model of sensitivity regulation in the
outer retina is lacking, whereas it is clearly important for modeling visual
processing upstream in the retina and beyond. It should necessarily form the
first stage of any model of the visual system that could function well in
natural, outdoor-lighting conditions. The present study, therefore, aims to
develop such a model, using the extensive set of horizontal cell measurements
recently published (Lee, Dacey, Smith, & Pokorny 2003; Smith et al., 2001). It will be shown that the sensitivity
regulation observed in horizontal cells with wide field, spectrally white
stimuli, is fully consistent with the regulation expected from the known
processes of the phototransduction machinery of the
cones.
Both phototransduction and the neural circuit of cone
and horizontal cell have been extensively investigated, and much is known about
the physiological processes that determine their dynamics (for reviews of
phototransduction, see Arshavsky, Lamb, & Pugh 2002; Burns & Baylor, 2001; Fain, Matthews, Cornwall, &
Koutalos 2001; Pugh & Lamb, 2000; for a review of horizontal cells, see
Kamermans & Spekreijse, 1999).
Below I will represent a series of these processes, first as differential
equations describing their dynamics, and subsequently as a system model
consisting entirely of first-order low-pass filters and static nonlinearities.
Because many readers may not be fully familiar with all of these fields, I will
present the key topics in a relatively self-contained manner. The variables in
the model have different physical dimensions, ranging from trolands through ion
currents and concentrations to electrical currents and voltages. To keep the
equations as concise as possible, I will not explicitly include dimensional
conversion constants, and I will allow gains that are not dimensionless.
Wherever the dimensions in an equation appear not to match, the reader should
assume an implicit conversion constant of unit
dimension. Low-pass filters and static nonlinearities
In the sections below I will show that the (coupled)
differential equations describing the system can be translated into a system
model with only two types of components: first-order low-pass filters and static
nonlinearities. The fact that the behavior of these components is
straightforward and well understood greatly simplifies understanding and
analysis of the system dynamics. I will therefore first introduce these basic
components.
The standard equation describing a low-pass filter with
time constant
τy,
transforming an input signal
x(t)
into an output signal
y(t),
is  | (1) |
with the dot denoting time
differentiation:  | (2) |
Figure 1A
shows how this filter is depicted in the models below. The solution of Equation 1 is
 | (3) |
which is the convolution of the input function
x(t)
with the impulse response of the filter,
 | (4) |
The low-frequency (DC-) gain of this filter
equals 1, thus low frequencies are not changed by the filter.
Figure 1. A. Representation of a first-order
low-pass filter transforming
x(t)
into
y(t),
with time constant
τy
and DC-gain 1. B. A static nonlinear function
f(x)
transforms x into
y for each
t.
An alternative form of a low-pass filter that
often occurs when dealing with chemical reactions and membrane processes is
given by a variant of Equation 1:
. | (5) |
This equation is associated with an impulse
response
. | (6) |
The low-frequency gain now equals
τy.
An example of such a process, where gain and time constant are covarying, is the
voltage response to a current injected into a cell: When the membrane resistance
is lowered, both the membrane time constant and the gain (voltage response to a
given current) decrease. Below, such processes are described as the cascade of a
separate gain
τy
and a standard low-pass filter as in Figure 1A.
The second component used in the models below is the
static (memory-less) nonlinearity depicted in Figure 1B: It gives, for each point in time,
the output
y(t)
as a function
f(x(t))
of the input
x(t).
The function
f(·)
itself is not a function of time, only of the present value of its input
x. A special case
is the function
f(x)
= gx, with
g a constant
describing a (linear)
gain. Outer segment: Phosphodiesterase activation and cGMP hydrolysis
For the equations describing the phototransduction
cascade I will keep the notation as short as possible by mostly using single
letter symbols for the variables and constants involved. Furthermore, I will
keep the number of variables, such as scaling constants, to a bare minimum, and
include only those that affect the calculations when fitting to the measurements
on horizontal cells. Cascaded scaling factors or gains will therefore be merged
into a single factor or gain wherever possible. Many of the equations are based
on modeling work by Calvert, Govardovskii, Arshavsky, and Makino ( 2002), Detwiler, Ramanathan, Sengupta, and
Shraiman ( 2000), Hamer ( 2000), Koutalos and Yau ( 1996), Pugh and Lamb ( 2000), Schnapf, Nunn, Meister, and Baylor ( 1990), and in particular Nikonov, Engheta,
and Pugh ( 1998), and Nikonov, Lamb, and
Pugh ( 2000). These studies also give
extensive references to the original experimental studies that have led to the
understanding of the dynamics of the various parts of the system.
Figure 2A shows
on the left the reaction scheme leading from the absorption of light
( I) by the visual
pigment ( R) via a
G-protein ( G) to
the production of activated phosphodiesterase
( E*).
In the first step, the visual pigment absorbs light, and is converted into an
active form
( R*).
The active form is removed with a rate constant
kR.
It is assumed here that the light intensity is sufficiently low such that the
concentration of R
is not significantly affected (new
R is produced fast
enough, and there is no significant bleaching of the pigment). The reaction is
then described
by , | (7) |
with
I the retinal
illuminance in trolands, and
AR
a scaling constant. This can be rewritten
as , | (8) |
which can be recognized as a low-pass filter
with time constant
τR
and gain
τRAR.
Figure 2.
A. Light I produces
excited visual pigment
R*,
which produces excited G-protein
G*,
activating phosphodiesterase (PDE). The system diagram to the right describes
only the associated low-pass filtering, whereas the gain of the reactions is
incorporated into the constant
kβ
shown in B. B. Production of
X
(cGMP) under conditions of clamped calcium (i.e., fixed
α). The differential
equation describing production and removal of cGMP can be interpreted as shown
in the system diagram on the right: a static nonlinearity
1/β followed by low-pass
filtering with a time constant
τX
= 1/β.
In the second step,
R*
activates a G-protein into its active form,
G*,
which subsequently forms an active complex
E*
with phosphodiesterase (PDE). Although the latter reaction can be modeled as a
separate low-pass filter, its time constant is assumed to be so short that it
can be neglected (Lamb & Pugh, 1992).
It is again assumed that light intensities are such that neither
G nor PDE is
significantly reduced. Therefore, the production of
E*
is described
by
 |
, | (9) |
with
kE
the rate of
E*
inactivation. This is also a low-pass filter, with time constant
τE
and gain
τEAE.
For simplicity, this gain and the one in Equation
8 are merged into the gain,
kβ,
describing the activity of
E*
(see below). Equations 8 and 9 can therefore be represented by the system model
on the right side of Figure 2A. Figure 2B shows on the left the reaction
scheme where
E*
reduces the concentration of cGMP (symbolized by
X below), which is
itself produced at a rate α. The
activity of PDE, β, is described
by a constant dark activity (here
cβ,
often called
βdark
in the literature) plus a term depending on the amount of activated
PDE: , | (10) |
with
kβ
a constant. The concentration of cGMP is then described
by . | (11) |
At first sight, this looks like a complicated
nonlinear equation, because the input,
β, is multiplied by the output,
X. However, it is
possible to reformulate this equation as a static nonlinearity followed by a
first-order low-pass filter with variable time constant. This can be seen be
rewriting Equation 11
as  | (12) |
In this equation, the input
1/ β is low-pass filtered into an
output X, with a
time constant
τX
depending on the input, and a gain
α. Assuming for the moment that
the gain α is constant (it is in
fact under calcium control; see below), Equations
10 and 12 can be represented by the system
model on the right side of Figure 2B. The
importance of 1/ β for setting
the sensitivity and time constant of the system has been discussed for rods (see
Nikonov et al., 2000). Outer segment: The calcium feedback loop
Figure 3 shows on
the left the reaction scheme of the calcium feedback loop. An increase in cGMP
concentration ( X)
will open more cyclic nucleotide-gated (CNG) ion channels in the plasma membrane
of the outer segment, resulting in an inward current consisting partly of
Ca 2+. The resulting increase in calcium concentration is counteracted
by a Na +/Ca 2+–K + exchanger, and possibly
by calcium buffering. The increased calcium concentration reduces the rate with
which guanylate cyclase (GC) synthesizes cGMP, and thus counteracts the initial
rise of cGMP. In a secondary loop, more important in cones than in rods (Rebrik
& Korenbrot, 2004), Ca 2+
decreases the sensitivity of the CNG channels to cGMP.
Figure 3. In the calcium control loop, an
increase in cGMP
(X) opens more
membrane channels, increasing the photocurrent
Ios
and the calcium influx. The increase in calcium reduces, via guanylate cyclase
(GC), the production of cGMP, counteracting the initial rise. In a secondary
negative feedback loop, calcium reduces the effectiveness of the membrane
channels (dashed lines).
The Ca2+ concentration, called
C here, is
described
by  |
, | (13) |
where
η is a scaling constant
describing which proportion of the total photocurrent,
Ios,
is carried by calcium, and
kC
is the removal rate of calcium, presumably due to the exchanger. Thus
C is a low-pass
filtered version of the photocurrent, with time constant
τC
and gain
τCη.
For the calculations, this gain will be merged into the scaling constant
aC
determining α, as described
below. The reaction scheme contains two
nonlinearities due to cooperativity. The opening of the CNG channels depends on
the cGMP concentration
as , | (14) |
with
Ios
the photocurrent into the outer segment, and
nX
typically 3 (Koutalos & Yau, 1996).
Scaling is incorporated into the scaling constant
aC
below, and into the scaling constant
ais
determining the voltage response of the inner segment (see next section). The
activity with which GC produces cGMP is, for the values of
C
relevant for the fits, described by
 | (15) |
with
aC
a scaling constant, and
nC
typically taken to be 2 (Koutalos & Yau, 1996). The numerator of Equation 15 is scaled to 1 without loss of
generality, because all scaling needed for the model fits is incorporated into
the scaling constants
aC
and
ais. Equations 12- 15
are represented by the system model on the right side of Figure 3. To emphasize that it is a negative
feedback loop and to enable an easy comparison with existing models, it is drawn
as a divisive gain control: The input
Q
(=1/ β) is divided by
1/ α, which is itself an
expansive function of the calcium concentration, and therefore provides strong
negative feedback. The broken line in the Figure represents the reduction
of the channel sensitivity caused by calcium: either through the calcium
concentration C or,
possibly more accurately, through the calcium current if the interactions are
restricted to local domains. To keep the model as simple as possible, I am not
modeling this interaction in detail. Instead, I assume it accounts for the fact
that the standard value
nX =3
cannot produce acceptable fits of the model to the measurements. It produces
major deficiencies in the sensitivities as a function of contrast and mean
intensity. Leaving
nX
as a free parameter in the fits leads to much lower values, typically
nX
=1.
This low value of
nX
may be the result of the direct calcium feedback onto the CNG channels: Channel
openings caused by an increase in
X are counteracted
by the subsequent increase in calcium influx. It is well known in engineering
that negative feedback loops can apparently linearize nonlinearities in the
forward path. For example, a fast divisive feedback loop with a squaring
operation in the feedback path will have
output =
input/output2, or
output =
input1/3, thus
converting an actual
nX =3
into an apparent
nX =1.
I will assume the value
nX =1
below.
Similarly, I found that the fits, although not
unreasonable for values
nC = 2
or 3, were significantly better for
nC ≈ 4.
An apparent value of
nC = 4
was recently reported and discussed for rods (Burns, Mendez, Chen, & Baylor,
2002). I will assume
nC =4
below. Inner segment and cone pedicle
The inner segment contains a range of ion channels,
partly voltage sensitive, shaping the response (Yagi & MacLeish, 1994). To model this without introducing many
(poorly known) parameters, I will follow here the approach of Detwiler, Hodgkin,
and McNaughton ( 1980). It is assumed
that the overall steady-state conductance of the membrane,
gis,
is given by a (nonlinear) function of the receptor potential
Vis: , | (16) |
where
Vis
is defined relative to the resting potential (i.e., the potential when
Ios
= 0). The voltage response to an abrupt change in
Ios
is given by the instantaneous conductance of the membrane,
gi,
thus  | (17) |
Finally, it is assumed that the instantaneous
conductance approaches the steady-state conductance according to first-order
kinetics: . | (18) |
The precise form of
gis(Vis)
is not known for primate cones, but I found that those aspects of horizontal
cell responses that are presumably generated at the inner segment (in
particular, response sagging, rebounds after pulses and steps, and reduced
sensitivity at low frequencies) are well modeled by
assuming , | (19) |
where
ais
is a scaling constant, and  is a constant that is approximately 0.7
according to the fits below. The change of
Vis
in response to a change in
Ios
is in reality not as instantaneous as suggested by Equation 17, because the membrane capacitance has
to be charged. This can be represented by an additional low-pass filter with
time constant
τm,
assumed to be approximately constant. The gain of this filter is merged into the
scaling constant
ais.
The above equations lead to the system model shown in Figure 4. Although the signal transfer from
the cone inner segment to the cone pedicle may produce some additional filtering
(Hsu, Tsukamoto, Smith, & Sterling, 1998), it is assumed here that the signal
arriving at the cone pedicle is that of the inner segment. An alternative
interpretation is that any additional filtering can be thought to be
incorporated into the parameters
γ,
ais,
τis,
and
τm
used here for the model of the inner
segment.
Figure 4.
Model of the filtering properties of the inner segment.
The cone-horizontal cell feedback loop
For the feedback from the horizontal cell to the cone
pedicle, I assume the subtractive scheme shown in Figure 5A. This is consistent with recent
proposals for the feedback mechanism (Kamermans, Fahrenfort, Schultz,
Janssen-Bienhold, Sjoerdsma, et al., 2001), and also with the
spatially local character of the gain control (see Discussion). The driving
force
Vs
for transmitter release
It
is determined by the difference of the voltage of the inner segment,
Vis,
and the voltage
Vh
of the horizontal cell multiplied by a gain
gh.
Thus . | (20) |
In the calculations below,
gh
is fixed to 1, because it can be merged with the forward gain
gs.
Going around the loop there are three low-pass filters, which together with the
gain
gs
determine the characteristics of the resonant oscillations observed in
horizontal cells. The minimum number of low-pass filters required to obtain
oscillations is two, but I found that the shape of the resonance peak and the
associated oscillations is better described with three filters than with two or
more than three. Although the filters can be arranged in any order, I
tentatively consider the filters with relatively short time constants,
τ1
and
τ2,
as being involved in the processes of transmitter release (e.g., related to the
rate of presynaptic calcium extrusion; Morgans, El Far, Berntson, Wässle,
& Taylor, 1998), synaptic diffusion
(e.g., related to the rate of glutamate removal; Gaal, Roska, Picaud, Wu, Marc,
et al., 1998), or postsynaptic
transduction. The longer time constant
τh
may then be interpreted as the effective time constant of the horizontal cell.
The properties of the feedback loop, in particular the total gain, will depend
on the spatial properties of the stimulus with respect to the (broad) receptive
field of the horizontal cell. Because the spatial extent of all stimuli used in
the measurements considered in this article was kept constant (5°
diameter), I assume a fixed total gain for each cell. The influence of the
spatial layout of the stimulus will be considered in a forthcoming
article.
Figure 5.
A. The cone-horizontal cell feedback circuit is basically linear (subtractive
feedback), where the membrane potential of the horizontal cell,
Vh,
is subtracted from that of the cone,
Vis.
The generally small difference is amplified by a gain
gs,
which forces
Vh
to follow
Vis
closely at low frequencies. At intermediate frequencies, the low-pass filters in
the loop produce a delay causing oscillations in the response. At high
frequencies, the feedback ceases to function, and
Vh
is then a low-pass filtered version of
Vis.
B. Nonlinearities added to the loop of A.
It(Vs)
describes the synaptic activation;
aI
is a factor depending, through
Vis,
on the background illuminance.
Nonlinear synaptic gain and
illuminance-dependent dynamics
The release of transmitter and its postsynaptic
transduction are known to be nonlinear processes. The cone-horizontal cell
feedback loop, possibly together with more local ionic feedback circuits, will
tend to (apparently) linearize this process (Kraaij, Spekreijse, &
Kamermans, 2000). The model as presented
up to this point, with a linear gain
gs,
produces acceptable fits to all horizontal cell measurements considered below.
There are two nonlinearities that improved the fits sufficiently to justify
their inclusion into the model. For high-contrast steps at high illuminance,
there is an indication of a transiently reduced gain
gs
(see Comparison with measurements, Figure 8). To model this, I included a
nonlinearity similar to the one used by Kamermans, Kraaij, and Spekreijse ( 2001): The effective transmitter
release as a function of
Vs
is, for the values of
Vs
relevant for the fits, described by a Boltzman
function: , | (21) |
with
gt,
Vk,
and
Vn
constants. The more negative
Vs
becomes, the more the transmitter release will shut down. Because the stimuli
considered in this article are spectrally white and have a broad spatial extent
(5°), the modulation of
Vs
is generally small (e.g., see Figure 6B,
panel 11). Therefore, the effect of the nonlinearity of Equation 21 is limited. This would be different,
however, when the stimulus has a narrow spatial extent, resulting in a larger
difference between the response of the excited cones and the horizontal cell,
and thus in a larger modulation of
Vs.
Similarly, a non-white stimulus can increase the modulation of
Vs
as well. The nonlinearity of Equation 21 is
then more important (Kamermans & Spekreijse, 1999).
Figure 6. A. Full model, essentially
consisting of a nonlinearity cascaded with two divisive feedback loops and a
subtractive feedback loop. B. Response to a 100-ms step in illuminance. The
panel numbers correspond to the processing stages marked in A. See the text for
details.
A
second nonlinearity becomes clear when inspecting the high-frequency
oscillations seen in response to pulses ( Figure 7). The frequency of these
oscillations decreases with decreasing background intensity. This indicates that
the time constants or gain of the feedback loop are intensity dependent. This
also influences the high-frequency part of the curves giving the sensitivity as
a function of illuminance and frequency ( Figure 14). I found that the shift in
oscillation frequency could be modeled by assuming that a single factor,
aI,
decreases the gain
gt
and increases the time constants
τ2
(or, equivalently,
τ1)
and
τh
with decreasing intensity. The effective gain and time constants are then
gt/ aI,
aIτ2,
and
aIτh.
Decreasing intensity covaries with increasing
Vis;
Good fits were obtained by making
aI
depend on
V′is,
a low-pass filtered version of
Vis,
as
, | (22) |
with
VI
and μ constants, and
V′is
obtained by low-pass filtering
Vis
with a time constant
τa
of 250 ms. Similar results were obtained by assuming that
aI
depends on
Vh
rather than
Vis.
The changes in gain and time constants obtained from the fits were modest,
typically 5-20% for 10-fold steps of the background intensity. Figure 5B shows the system model associated
with both of the above
nonlinearities.
Figure 7. Black circles: data from Figures 4
and 5 of Smith et al. ( 2001), fitted by
the model (continuous red lines). The dashed blue lines show the responses of
the model using the generic parameter values ( Table 1). The left column shows responses to
10-ms pulses (starting at t=0 ms; see
black bars at time axes) of varying contrast (0.1, 1, 2, 4, 8, 16) at background
illuminances of 100, 10, and 1 td. The right column shows this for 100-ms steps
(starting at t=0 ms; see black bars at
time axes). Traces are offset from 0 mV for the sake of clarity. Parameters of
the fitted curves:
τR
= 0.49,
τE
= 16.8,
cβ =
2.8·10 -3,
kβ =
1.63·10 -4,
τC
= 2.89,
aC
=
9.08·10 -2,
γ = 0.678,
τis
= 56.9,
ais
=
7.09·10 -2,
gt
= 151.1,
VI
= 19.7, and μ = 0.733; for
dimensions of the parameters, see Table 1.
Parameters not mentioned are set at the generic values given in Table 1 (as they are for the figures below). Note
that the order of the parameter values of
τR
and
τE
is arbitrary; the shortest of the values will always be arbitrarily assigned to
τR
below.
Figure 8.
Effect of using a linear (dashed green line) or nonlinear (continuous red line)
synaptic gain for a 100-ms step of contrast 16 at 100 td (i.e., a step from 100
to 1700 td; step starts at t = 0 ms;
see black bar at time axis). Parameters for the nonlinear case are identical to
those of Figure 7; for the linear case
gs
= 8.81, with other parameters identical to those of Figure 7.
Example of model performance
The model is shown in its complete form in Figure 6A. Figure 6B shows how a simple stimulus, a
100-ms step of contrast 2 at a background illuminance of 100 td, is transformed
by the subsequent processing steps in the model, using the parameters fitted to
Figure 7 below. The encircled numbers in
the panels correspond to the numbers in Figure 6A. The intensity step is first
low-pass filtered by
τR
and
τE,
yielding a signal proportional to the concentration of activated PDE (panel 2).
The rate of cGMP hydrolysis, β,
is elevated by
cβ
relative to the
E*
curve ( Equation 10), hardly visible in the
graph at these illuminances (panel 3). The inverse of
β (panel 4) is the signal that
acts as the input to the calcium feedback loop. It is regulated by
1/ α (panel 8), a low-pass
filtered version of the loop output. This signal is slightly delayed relative to
1/ β because of the
low-pass filtering, and therefore boosts high temporal frequencies (panel 5).
Furthermore, the feedback effectively reduces the dynamic range needed by the
signal (cf. panels 6 and 4). The feedback loop of the inner segment (panel 10)
reduces low frequencies (panel 9). In panel 9 the membrane voltage of the cone
is shown relative to its membrane potential in the dark (i.e.,
Vis-Vis,dark).
Similarly, panel 14 shows the membrane voltage of the horizontal cell relative
to its dark value (i.e.,
Vh-Vh,dark).
It should be noted that the scaling of
Vis
relative to
Vh
is not fully determined by the measurements on
Vh
considered here, because it depends on fixing
gh
= 1 in Equation 20. In the cone-horizontal cell feedback
loop (panels 11-14), the membrane potential of the horizontal cell is subtracted
from that of the cone. The resulting
Vs
= Vis-Vh
is small, only in the order of a mV. It is transient, because the signal
in the horizontal cell is delayed, due to the low-pass filtering, relative to
that in the cone. The resulting oscillations (panels 11, 12) arrive, however,
strongly attenuated in the horizontal cell (panel 14). Note that the signal
presumably going to the bipolar cells (bc in Figure 6A) is considerably more transient
(panel 13) than that of the horizontal cell. How much of this shows up in the
bipolar cells depends on the amount of low-pass filtering and further processing
occurring in the bipolar
cells.
I implemented the model as a series of auto-regressive
moving average (ARMA) filters (e.g., Fante, 1988; also see below). A Fortran90 code
producing the example of Figure 6B can be
obtained by clicking here ( Supplementary
material). I verified the correctness of the model implementation by
comparing its responses to small signals with the transfer function obtained
from a small-signal analysis of the model (see Supplementary
material), and by comparing its responses to large signals with a
fourth-order Runge-Kutta solution of the system of differential equations
involved. The implementation using ARMA filters is advantageous because it is
both highly accurate and very fast, and therefore allows extensive fitting of
the model to the horizontal cell data. The fitting was performed using a simplex
algorithm (Press, Teukolsky, Vetterling, & Flannery, 1992) for minimizing the RMS-deviation
between model responses and measurements. When responses with very different
amplitudes
rmax
were used for simultaneous fitting, the RMS-deviations were scaled by 
to prevent the largest responses to completely dominate the fit. This was a
pragmatic choice that still assigns more weight to large responses because they
are less affected by noise and provide more information on the nonlinearities in
the model. The measured data from horizontal cells in Figures 7- 14 were
obtained from the graphs in the on-line versions of Smith et al. ( 2001) and Lee et al. ( 2003), using specialized software
(g3data).
For a first-order low-pass filter with time constant
τ, the output
y(n)
to an input
x(n),
with a time step
Δ t, is given
by the following ARMA filter (Brown, 2000):  | (23) |
with
 | (24) |
In the calculations I used
Δ t
= 100 μs; with this time
step, the model computes approximately 100 times faster than the real cone (3
GHz PC, Intel Fortran compiler on Linux). I verified that results were
indistinguishable from those obtained with time steps of 10 μs or 200
μs. For time steps significantly longer than 200 μs, the implicit
extra delay of one time step in the high-gain feedback loops of Figure 6A leads to spurious
oscillations. Comparison with measurements
Below I present fits of the model to a range of
measurements on macaque H1 horizontal cells, as published in Lee et al. ( 2003) and Smith et al. ( 2001). The behavior of the model is complex,
due to the nonlinearities and feedback loops, and the model contains many
parameters. There is always the possibility, therefore, that good fits are
obtained by overfitting (i.e., with very different, nonphysiological parameter
values for different stimuli or different cells). To show that this is not a
significant problem here, I determined a set of typical parameter values (listed
in Table 1), which together determine a
"generic model" producing generic responses. For most measurements presented
below (black symbols), I will show two model calculations: the generic response
(dashed blue line) and the fitted response (continuous red line). I often fitted
with only a subset of parameters left free, fixing the others because which
parameters are relevant depends on the type of stimulus. For example, the
parameters determining the behavior of the model for large changes of background
intensity should not be left free to vary for a medium contrast stimulus at one
particular background intensity. Details on the fitted parameters and their
values are given in the Figure captions and in Table 1.
|
|
Description
|
Units
|
Generic value
|
Range
|
|
τR
|
time constant of R* inactivation
|
ms
|
3.4
|
0.5 - 6.5
|
|
τE
|
time constant of E* inactivation
|
ms
|
8.7
|
3.0 - 16.8
|
|
cβ
|
rate constant of cGMP hydrolysis in darkness
|
(ms)-1
|
2.8·10-3
|
2.0·10-3
- 4·10-3
|
|
kβ
|
rate constant of cGMP hydrolysis
|
(ms)-1/td
|
1.6·10-4
|
4.9·10-5
- 3.9·10-4
|
|
β
|
cGMP hydrolysis rate
|
(ms)-1
|
-
|
-
|
|
τX
|
time constant of cGMP turnover
|
ms
|
-
|
-
|
|
X
|
scaled cGMP concentration
|
au
|
-
|
-
|
|
nX
|
apparent Hill coefficient of CNG activation
|
-
|
1
|
fixed
|
|
Ios
|
scaled photocurrent of outer segment
|
au
|
-
|
-
|
|
τC
|
time constant of
Ca2+ extrusion
|
ms
|
3
|
2 - 6.3
|
|
C
|
scaled
Ca2+ concentration
|
au
|
-
|
-
|
|
aC
|
scaling constant of GC activation
|
au
|
9·10-2
|
3.5·10-2
- 2.1·10-1
|
|
nC
|
apparent Hill coefficient of GC activation
|
-
|
4
|
fixed
|
|
α
|
GC activity
|
au
|
-
|
-
|
|
τm
|
capacitive membrane time constant
|
ms
|
4
|
fixed
|
|
Vis
|
membrane voltage of inner segment
|
mV
|
-
|
-
|
|
γ
|
parameter of membrane nonlinearity
|
-
|
0.7
|
0.49 - 0.73
|
|
ais
|
scaling constant of membrane nonlinearity
|
au
|
7·10-2
|
1.9·10-2
- 1.7·10-1
|
|
τis
|
time constant of membrane nonlinearity
|
ms
|
90
|
23 - 139
|
|
Vs
|
effective membrane voltage of cone pedicle after
subtractive feedback
|
mV
|
-
|
-
|
|
gt
|
parameter of transmitter activation curve
|
au
|
125
|
71 - 185
|
|
Vk
|
parameter of transmitter activation curve
|
mV
|
-10
|
fixed
|
|
Vn
|
parameter of transmitter activation curve
|
mV
|
3
|
fixed
|
|
It
|
transmitter activation
|
au
|
-
|
-
|
|
VI
|
parameter of gain factor
aI
|
mV
|
20
|
20 - 50
|
|
μ
|
parameter of gain factor
aI
|
-
|
0.7
|
0.17 - 0.73
|
|
τa
|
time constant for gain factor
aI
|
ms
|
250
|
fixed
|
|
aI
|
gain factor
|
-
|
-
|
-
|
|
τ1
|
time constant of cone - horizontal cell loop
|
ms
|
4
|
fixed
|
|
τ2
|
time constant of cone - horizontal cell loop
|
ms
|
4
|
2.5 - 4
|
|
τh
|
time constant of cone - horizontal cell loop
|
ms
|
20
|
20 - 35
|
|
Vh
|
membrane voltage of horizontal cell
|
mV
|
-
|
-
|
Table 1 . Parameters and variables
used in the model; see Figure 6 and Equations 7- 22.
Generic values are used for calculating the generic curves in the figures. The
range shows the minimum and maximum values obtained from all fits presented
here. Notes: the smallest of the values at
τR
and
τE
is arbitrarily assigned to
τR;
generic values of
τX
(=1/(cβ+kβI),
with I in td) are
340, 230, 53, and 6.1 ms for illuminances of 1, 10, 100, and 1000 td,
respectively. au = arbitrary unit.
Because the properties of horizontal cells, such as
their sensitivity, vary, the generic response will generally deviate from the
measurements. But as will become clear below, the generic responses always
capture the basic qualifying characteristics of the measured responses.
Apart from the parameters of the model of Figure 6A, there is one additional parameter
that I used as a free parameter in the fits where applicable, namely an overall
delay. This accounts for any delay not incorporated into the model (such as
transmission and diffusion times and possibly instrumental delay). The delay was
forced to be identical for the responses to all stimulus conditions used for a
particular cell. It was always small, typically around 3
ms.
The light intensities in this study are expressed in
units of trolands (td). This is a measure of retinal illuminance, defined as the
area, in mm2, of the pupil of the eye times the scene luminance,
expressed in candela/m2. At a luminance of 100 cd/m2, the
pupil has a diameter of approximately 3 mm, thus then 100 cd/m2
corresponds to 640 td. Such a luminance corresponds roughly to the mean
luminance outdoors on a dull cloudy day, and is an order of magnitude higher
than the typical mean luminance
indoors.
Figure 7 shows
responses to 10-ms pulses and 100-ms steps, with various contrasts superimposed
on 100-, 10-, and 1-td backgrounds. Note the nonlinearity of response size as a
function of contrast and of background intensity. The model fits (continuous red
lines) were made to all stimulus conditions simultaneously, and are generally
good, considering the wide range of stimulus conditions. The generic model
responses (dashed blue lines) capture the qualitative characteristics of the
measured responses.
It is possible to identify the parts of the model
responsible for various aspects of the response shapes. The response size as a
function of contrast and background intensity is mainly determined by the model
components up to the generation of the photocurrent,
Ios.
The response sagging during the step responses at 100 td, and the response
rebounds after pulses and steps, are mainly due to the properties of the model
components representing the inner segment. The high-frequency oscillations are
due to the cone-horizontal cell feedback loop.
At 100 td these oscillations are less prominent at
high-contrast steps than at low-contrast steps, which points to the existence of
a nonlinearity in the cone-horizontal cell feedback loop. This was modeled in Figure 5B. Figure 8 shows the effect of the absence of
this nonlinearity (as in the model of Figure 5A). The effect of the nonlinearity
can be understood as follows. During a high-contrast step,
Vs
becomes strongly negative, and thus brings the transmitter release, Equation 21, into a part of the curve with
decreased slope. This decreases the small-signal gain, and this decreased gain
in the feedback loop leads to a less steep rise of the response and less
prominent oscillations. The fact that the oscillations in the model response are
not as strongly reduced as in the measured response suggests that there are
additional nonlinearities present, possibly due to voltage-sensitive channels in
the horizontal cell membrane active at large hyperpolarizations.
I found that the best fits to the stimuli here and
below were obtained with a low value of the time constant of the calcium
feedback loop, with
τC
typically 3 ms. Forcing
τC
to be much larger worsened the fits considerably, and led to strongly biphasic
cone photocurrents and membrane voltages in response to pulses and steps. This
biphasic behavior is not consistent with the horizontal cell measurements
considered here, which show only a mild rebound ( Figure 7), with dynamics differing from those
predicted from a slow calcium feedback. In rods, the photocurrent is generally
not biphasic, unless the calcium dynamics are manipulated (Torre, Matthews,
& Lamb, 1986). Although there are
reports in the literature of strongly biphasic photocurrents and membrane
voltages in primate cones (Schnapf, Nunn, Meister, & Baylor, 1990; Schneeweis & Schnapf, 1999), these findings may well be a
consequence of a disturbed calcium dynamics due to the experimental techniques
used. Such a disturbance of the cones is unlikely to have occurred in the
horizontal cell measurements considered here, because cones were not directly
manipulated, and the preparation left the retina mostly intact (Dacey, 1999; Smith et al., 2001).
Figure 9 shows
responses to sinusoids of various frequencies at contrasts 0.25, 0.5, and 1, all
at a 1000-td background level. In particular at high contrasts there are several
distortions visible in the experimental data, which are also produced by the
model. The compressive/expansive distortion at 0.61 Hz is mainly produced by the
static nonlinearity, 1/ β. The
low-intensity part of the sinusoidal stimulus produces a small
β, which is subsequently blown
up by 1/ β to the high peak in
the response. The peak height is limited by the minimum value of
β,
cβ
in Equation 10. The high-intensity parts of the
sinusoid produce a large β,
which is subsequently compressed by
1/ β, which acts then as a
compressive nonlinearity. The detailed shape of the distortion at 0.61 Hz is
also determined by the calcium feedback loop, which in effect relinearizes the
response to some extent: the high peak (low intensity, large
1/ β) produces high levels of
calcium, reducing the gain of the forward path (divisive gain control in Figure 3). This brings the response
considerably closer to the steady-state level (dashed line). On the other hand,
the low response (due to high intensity, small
1/ β) produces low levels of
calcium, increasing the gain of the forward path, also resulting in a response
closer to the steady state than would have resulted without the calcium
feedback. Because the former effect is stronger than the latter, the distortion
is reduced.
Figure 9.
Black circles: data from Figure 6 of Lee et al. ( 2003), fitted by the model (continuous red
lines). Dashed blue lines: generic model. Responses are shown to sinusoids of
0.61, 4.88, 9.76, and 30.3 Hz, of contrast 0.25, 0.5, and 1, at a mean
illuminance of 1000 td. Horizontal dashed lines show the steady-state membrane
potential. Fitted parameters:
τR
= 3.46,
τE
= 9.01,
cβ =
3.44·10 -3,
kβ =
6.44·10 -5,
τC
= 2.41,
aC
=
9.51·10 -2,
γ = 0.488,
τis
= 73.2, and
ais
=
8.68·10 -2; fixed
parameter:
gt
= 150.
For higher frequencies, the distortion due to
1/ β gradually disappears,
because the first two low-pass filters,
τR
and
τE,
reduce the depth of modulation of
β and thus
1/ β. At 4.88 and 9.76 Hz,
another distortion becomes clearly visible: The falling flank of the response
becomes steeper than the rising flank. This distortion is mainly due to the
low-pass filters in the calcium feedback loop: The maximum reduction due to the
control signal 1/ α ( Figure 6A) is only reached right after the
peak in 1/ β, which results in a
steep falling flank right after that peak.
Finally, a third distortion can be seen at 30.3 Hz,
where the rising flank is steeper than the falling flank. This is due to the
filtering by the cone-horizontal cell feedback circuit. This circuit has a
resonance frequency around 30-40 Hz, with strong phase changes near the
resonance peak. This strongly shifts the phase of the distortion products,
harmonics at multiples of the fundamental frequency, already produced by the
cone. The first harmonic thus gradually shifts phase relative to the fundamental
when going through the frequency range surrounding the resonance frequency,
which happens to result in a steepening of the rising flank at 30.3 Hz. The
distortions described here appear not to be specific to macaque H1 cells,
because very similar distortions were measured in cat horizontal cells
(Lankheet, van Wezel, & van de Grind, 1991).
It may be noted that some of the remaining deviations
between measurements and fits in Figure 9
are related to small vertical offsets between them. Indeed, the fits improve
when allowing for small errors, in the order of a mV or less, in the estimates
of the steady-state potentials (horizontal dashed lines). Such errors could
arise, for example, by small drifts in the intracellularly recorded membrane
potential during the experiment.
In Lee et al. ( 2003) an experiment was performed to test the
speed of the sensitivity regulation. It consists of a high-frequency test
sinusoid superimposed on a low-frequency vehicle wave of high modulation depth.
The local response to the test modulation then gives a measure of the
sensitivity at a particular phase, and therefore illuminance, in the vehicle
wave. Figure 10 shows measurements and
model responses. As can be seen, the sensitivity regulation is almost
instantaneous, with only a small delay mainly due to the low-pass filters in the
calcium control loop. The test response can be quantified by extracting the
amplitude of the fundamental frequency for each response cycle (Lee et al., 2003). Figure 11 shows for two cells how this
response varies as a function of vehicle contrast. Clearly, the responses are
well captured by the
model.
Figure 10. Black circles: data from
Figure 1B of Lee et al. ( 2003), fitted
by the model (continuous red lines). Dashed blue lines: generic model. A test
wave of 19.5 Hz with an amplitude of 127.5 td was superimposed on a vehicle
wave of 0.61 Hz and contrast 0.825 at a mean illuminance of 1000 td. Horizontal
dashed line: steady-state membrane potential. Fitted parameters:
τE=5.10,
kβ =1.14·10 -4,
aC=3.53·10 -2,
γ =0.729,
τis=22.8,
and
ais=6.68·10 -2;
fixed parameters:
τR=1,
cβ =3·10 -3,
τC=2,
and
gt=100.
Figure 11.
Black circles: data from Figure 4 of Lee et al. ( 2003), fitted by the model (continuous red
lines). Dashed blue lines: generic model. The data points show the amplitude of
the first harmonic of the test wave in an experiment similar to the one in Figure 10, for vehicle contrasts of 0.2,
0.34, 0.6, and 0.85. A and B are from two different H1 cells. Fitted parameters
of A:
τR=4.66,
τE=9.27,
kβ=7.83·10 -5,
aC=1.09·10 -1,
and
ais=3.33·10 -2;
fixed parameters of A:
cβ=3·10 -3
τC=4,
and
g |