Volume 6, Number 4, Article 9, Pages 414-428 doi:10.1167/6.4.9 http://journalofvision.org/6/4/9/ ISSN 1534-7362
Dimensionality reduction in neural models: An information-theoretic generalization of spike-triggered average and covariance analysis
Jonathan W. Pillow
Gatsby Computational Neuroscience Unit, University College London, London, UK
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Eero P. Simoncelli
Howard Hughes Medical Institute and Center for Neural Science, New York University, NY, USA
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Abstract

We describe an information-theoretic framework for fitting neural spike responses with a Linear–Nonlinear–Poisson cascade model. This framework unifies the spike-triggered average (STA) and spike-triggered covariance (STC) approaches to neural characterization and recovers a set of linear filters that maximize mean and variance-dependent information between stimuli and spike responses. The resulting approach has several useful properties, namely, (1) it recovers a set of linear filters sorted according to their informativeness about the neural response; (2) it is both computationally efficient and robust, allowing recovery of multiple linear filters from a data set of relatively modest size; (3) it provides an explicit “default” model of the nonlinear stage mapping the filter responses to spike rate, in the form of a ratio of Gaussians; (4) it is equivalent to maximum likelihood estimation of this default model but also converges to the correct filter estimates whenever the conditions for the consistency of STA or STC analysis are met; and (5) it can be augmented with additional constraints on the filters, such as space–time separability. We demonstrate the effectiveness of the method by applying it to simulated responses of a Hodgkin–Huxley neuron and the recorded extracellular responses of macaque retinal ganglion cells and V1 cells.

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History
Received October 21, 2005; published April 28, 2006
Citation
Pillow, J. W., & Simoncelli, E. P. (2006). Dimensionality reduction in neural models: An information-theoretic generalization of spike-triggered average and covariance analysis. Journal of Vision, 6(4):9, 414-428, http://journalofvision.org/6/4/9/, doi:10.1167/6.4.9.
Keywords
neural coding, white noise analysis, reverse correlation, receptive field, information theory, neural modeling
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